PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3826_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 37201.9 Da    PI: 5.9695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3826_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10182229455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+++Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  RrC3826_p3 182 SHSIAERARREKISERMKFLQDLVPGC----DKITGKAGMLDEIINYVQSLQ 229
                 8*************************9....899*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.59E-11176233No hitNo description
SuperFamilySSF474591.18E-16176246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17178244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-9184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMMNVEATEA ELFLNSADMS VLERQRAHLN YHHHHYPGFF SNSSTINGGD IDGFLASAGL  60
ELPAIYGETT VHGDARISVT PGNITTESGN FKKRKFGCVD AETKVFNEKK KMMTAVEEEE  120
EEEEEKSKVT EQSNKSMMMM KMKNKAKKEQ NSCSNDSSKV TKDSQRTDYI HVRARRGQAT  180
DSHSIAERAR REKISERMKF LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QVEFLSMKLA  240
TVSPRLDFNI DDIFAKEVVS APMTNLPNTV MPPHMMVNSG YPHDMVDSGY VHFNPMQQVV  300
TSSDPLSCFN NGQSAATVWD SDVQNLYSSL GV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111901.10.0PREDICTED: transcription factor bHLH63-like
SwissprotQ8GY611e-148BH063_ARATH; Transcription factor bHLH63
TrEMBLM4D4Y30.0M4D4Y3_BRARP; Uncharacterized protein
STRINGBra011540.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59472543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-133cryptochrome-interacting basic-helix-loop-helix 1